Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015951734.1_cds_XP_016491675.1_81966
CDS Infomation

[gene=LOC107811290] [db_xref=GeneID:107811290] [protein=transcription initiation factor IIF subunit alpha isoform X2] [protein_id=XP_016491675.1] [location=complement(join(19234..19326,19572..19778,20072..20284,20481..20615,21482..21597,22088..22458,22569..22714,24215..24370,26727..26897))] [gbkey=CDS]
Sequence

ATGTCGATAGATTTGGTACTGAAACCGTCGTGTAGCAGGTGCGGCTCCACGTCGGAGTTG
TACGGAAGCACCTGCAAGCACTTGACTCTTTGCATGTCTTGTGGTAAAAACATGGCTGAG
ACTCGTGATAAATGTTATGAGTGTGGCGCTCCGATCACACGACTGATTCGAGAGTATAAT
GTTCGGGCTTGCTCCAGCAATGACAAGAATTATTTCATTGCTCGATTTGCTTCAGGCTTA
CCGAACTTTTCAAAAAAGAAGAATGAGAGTAAATGGACTTTACAAAAAGAAGGTTTGCAA
GGACGTCAAGTTACGGATACTTTGCGGGAAAAGTACAAGAATAAACCATGGCTATTAGAG
GATGAAACCGGTCAATTTCAGTTCCATGGTCAGCTTGAGGGAGCACAGTCTGCACAATAT
TATCTATTGATGATGCAGGGTGAAGAGTTGGTTGCTATTCCAGCTGGTTCTTGGTACAAC
TTTAACAAAGTTGCCCAATATAAGCAACTTACTCTGGAGGAAGCAGAGGAGAAAATGAAA
AATAGAAGGAAAACTGCAGATGGGTACCAGAGATGGATGATGAAAGCAGCAAATAATGGA
CCTGCTGCCTTCGGTGAAGTAGAAAGATCTGATGACAAGGAAAGTGGATCTGGTGGGACA
AGGGGGCGTAAGAAAACTTCTGGTGATGAGGAGGAAGGCAACGGTTCGGACCATGGGGAT
GAAGATGAGGAAGAGGAGGCTGCTAGAAAAAGCAGGTTGGGACTCAACAAAAGAGGCGCT
GATGATGATGAAGAGGGTCCTAGAGGGGGTGATCTTGACCTGGATGATGATGATATTGAA
AAAGGGGATGATTGGGAGCATGAAGAGATTTTTACGGATGATGATGAAGCTGTTGGGAAT
GATCCTGAGGAGAGGGAAGATTTGGCTCCTGAAATTCCTGCTCCTCCTGAGATTAAGCAG
GATGACGAAGACGAGGATGAAGGTGATGAAGAGGGAGGGGGTCTGAGTAAATCTGGTAAA
GAGCTGAAAAAGTTGCTTGGAAAAGCTAATGGATTGAATGAATCAGATGCTGATGATGAC
GATGATGACGATGATACAGAAGAGGATATTTCACCTGTATTAGCTCCTAAGCCGAAGGAA
GCTCCCAAAGAAGAACCGATCGACAACAGCAGTCCTTCGAAACCATCTGCTTCTGGACCC
ACTCGTGGAACTCCAACTTCAAAATCAGCTAAGACTAAAAGAAAAGCTAATGTTGATGAC
TCAAAACCAACCAATGGTGCTCCCTTGAAAAAAGTGAAAACAGAAACGGATGCCAAACCT
GGGAAAGATGAAACTCCGTCTACTGCGAAGAACAGTGTTCTCCCAAAGGGTGCATCACCC
TCTTCCAAAACTGCTCCAAGTCCTGCCACAGGTCCTGTTACTGAAGAAGAAATTAGAGCT
GTTCTATTGCAGAGAAAACCAGTGACCACACAGGATCTTGTCAGCCAATTTAAATCTCGT
TTAAAATGTAAAGAGGATAAGGCTGCTTTTGCTGATGTATTGAGGAAGATCTCCAAGATA
CAGAAGACCGGTACAGGAACAAGCTATGTTGTGTTACGAGAGAGGTAA

Peptide Sequence

PEP ID

XP_016491675.1
PEP Infomation

PREDICTED: transcription initiation factor IIF subunit alpha isoform X2 [Nicotiana tabacum]
Sequence

MSIDLVLKPSCSRCGSTSELYGSTCKHLTLCMSCGKNMAETRDKCYECGAPITRLIREYN
VRACSSNDKNYFIARFASGLPNFSKKKNESKWTLQKEGLQGRQVTDTLREKYKNKPWLLE
DETGQFQFHGQLEGAQSAQYYLLMMQGEELVAIPAGSWYNFNKVAQYKQLTLEEAEEKMK
NRRKTADGYQRWMMKAANNGPAAFGEVERSDDKESGSGGTRGRKKTSGDEEEGNGSDHGD
EDEEEEAARKSRLGLNKRGADDDEEGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVGN
DPEEREDLAPEIPAPPEIKQDDEDEDEGDEEGGGLSKSGKELKKLLGKANGLNESDADDD
DDDDDTEEDISPVLAPKPKEAPKEEPIDNSSPSKPSASGPTRGTPTSKSAKTKRKANVDD
SKPTNGAPLKKVKTETDAKPGKDETPSTAKNSVLPKGASPSSKTAPSPATGPVTEEEIRA
VLLQRKPVTTQDLVSQFKSRLKCKEDKAAFADVLRKISKIQKTGTGTSYVVLRER

Transcript Sequence

Gene sequence data has not been registered.